REFEREED JOURNALS || BOOK CHAPTERS & THESIS

12. Y. Cao, N.R. Kern, S.-J. Park, S. Kim, J. Lee, and W. Im (2024)
    Practical Use of CHARMM-GUI Glycan Reader & Modeler for SARS-CoV-2 Spike Protein in Complex with hACE2.
    In Methods in Molecular Biology: Glycoinformatics - 2nd edition,
    T. Lutteke Ed. submitted.

11. A.L. Duncan, Y. Gao, E. Haanappel, W. Im, and M. Chavent (2024)
    Recent Advances in Modeling Membrane β-Barrel Proteins Using Molecular Dynamics Simulations: From Their Lipid Environments to Their Assemblies.
    In Methods in Molecular Biology: Transmembrane β-Barrel Proteins,
    R. Ieva Ed. 2778, 311-330.

10. H.S. Lee and W. Im (2017)
    G-LoSA for Prediction of Protein-Ligand Binding Sites and Structures.
    In Methods in Molecular Biology: Function Prediction,
    D. Kihara Ed. 1611, 97-108.

9. H. Rui, M. Rivera, and W. Im (2016)
   Protein dynamics and ion traffic in bacterioferritin function: A molecular dynamics simulation study on wild type and mutant Pseudomonas aeruginosa BfrB.
   In Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria,
   F.J. de Bruijn Eds. 1118-1129.

8. S.S. Mallajosyula, S. Jo, W. Im, and A.D. MacKerell, Jr. (2015)
   Molecular Dynamics Simulations of Glycoproteins using CHARMM.
   In Methods in Molecular Biology: Glycoinformatics,
   T. Lutteke and M. Frank Eds. 1273, 407-430.

7. S. Jo, E.L. Wu, D. Stuhlsatz, J.B. Klauda, A.D. MacKerell, Jr., G. Widmalm, and W. Im (2015)
   Lipopolysaccharide Membrane Building and Simulation.
   In Methods in Molecular Biology: Glycoinformatics,
   T. Lutteke and M. Frank Eds. 1273, 391-406.

6. T. Rathinavelan and W. Im (2010)
   A Computational Approach to Explore Protein Translocation through Type III Secretion Apparatus.
   In Quantum Bio-Informatics: From Quantum Information to Bio-Informatics,
   L. Accardi, W. Freudenberg, and M. Ohya Eds. 26:453-463.

5. J. Chen, W. Im, and C.L. Brooks III (2010)
   Implicit solvent force field optimization.
   In Modeling Solvent Environments,
   M. Feig Ed. (Wiley-VCH, Germany). 167-190.

4. J. Lee and W. Im (2008)
   Formalisms and Applications of Helical Restraint Potentials.
   In Quantum Bio-Informatics: From Quantum Information to Bio-Informatics,
   L. Accardi, W. Freudenberg, and M. Ohya Eds. 21:359-370.

3. B. Roux, D. Beglov, and W. Im (1999)
   Generalized Solvent Boundary Potentials for Computer Simulations.
   In Treatments of Electrostatics Interactions in Computer Simulations of Condensed Media, Santa Fe Workshop,
   L.R. Pratt and G. Hummer Eds. 492:473-491.

2. W. Im (2002)
   The Role of Electrostatics in Ion Permeation and Selectivity of Biological Membrane Channels.
   Ph.D. Thesis, Cornell University.

1. W. Im (1996)
   Molecular Dynamics Simulation on Thermodynamic, Structural, and Dynamic Properties of Liquid Alkanes and Liquid Acetonitrile.
   M. Sc. Thesis, Hanyang University.